Introduction | Listing and loading models | Example data | Sampling settings | A test model | Zheng et al (2006) Barrier Effects Model | Count responses | Structure of the fitted object | Interpreting the fit | Count responses (alternative parametrization) | Dichotomous responses | Trichotomous responses | Zheng et al (2006) Group Prevalence Model | Maltiel et al (2015) Barrier Effects Model | Maltiel et al (2015) Random Degree Model | Maltiel et al (2015) Transmission Bias Model | Maltiel et al (2015) Combined Model | Where to go from here | References

What is alluvial diagram? | Simple use | Customizing | Customizing colors | Hiding and reordering alluvia | Hiding | Changing "layers" | Adjusting vertical order of categories | Adjusting vertical order of alluvia | Appendix

The formats | Digraph6 | Graph6 | Sparse6 | Main functions | Examples | Encode a list of 'igraph' objects | Decode a vector of different types of symbols | Tidy graph databases

Loading example data | Functions asNetwork and asIgraph | network => igraph | igraph => network | Handling attributes | Network objects to/from data frames | Appendix | Example networks | Session information

Data | Mixing matrix | Mixing data frames | Measures | Assortativity coefficient | Coleman's homophily index | E-I | Freeman's segregation index | Gupta-Anderson-May | Odds-ratio | Segregation Matrix Index | Spectral segregation index | References

Get oai | Identify | ListIdentifiers | Count Identifiers | ListRecords | GetRecords | List MetadataFormats | List Sets | Biodiversity Heritage Library

Local methods | Common neighbours | Salton Index (cosine similarity) | Jaccard Index | Sørensen Index | Hub Promoted Index | Hub Depressed Index | Leicht-Holme-Newman Index | Preferential Attachment | Adamic--Adar Index | Resource Allocation Index | Global methods | Katz Index | Average Commute Time | Normalized Average Commute Time | Cosine based on $L^{+}$ | Random Walk with Restart (RWR) | $L^{+}$ directly | Matrix Forest Index | Quasi--local methods | Shortest Paths (Graph distance) | Local Path Index | Acknowledgements | References

Local methods | Common neighbours | Salton Index (cosine similarity) | Jaccard Index | Sørensen Index | Hub Promoted Index | Hub Depressed Index | Leicht-Holme-Newman Index | Preferential Attachment | Adamic--Adar Index | Resource Allocation Index | Global methods | Katz Index | Average Commute Time | Normalized Average Commute Time | Cosine based on $L^{+}$ | Random Walk with Restart (RWR) | $L^{+}$ directly | Matrix Forest Index | Quasi--local methods | Shortest Paths (Graph distance) | Local Path Index | Acknowledgements | References

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